So-called ubiquitins can play an important role during bacterial infections. Are they suitable for new therapeutic approach?

What is this research project about?

Diagram of implant-associated infections

What is this research project about?

The risk and the course of serious bacterial infections are primarily determined by the interaction between the specific bacterium and the infected human. The susceptibility to infection is critically determined by individual host-specific factors including an underlying immunodeficiency, the age and the existence of implants. Bacterial pathogens exploit the impaired resistance of humans to cause infections. At the same time, practically all relevant bacterial pathogens actively weaken the immune system of the infected individuals and thereby exacerbate the infection. Due to the increasing antibiotic resistance of bacteria, antibiotic therapy becomes more challenging. In this regard, the prevention of an impairment of the immune system and its strengthening constitute an innovative therapeutic option.

What’s the current status?

In order to rapidly sense pathogens, the immune system possesses several receptors which identify invading bacteria. Upon engagement of these receptors, defense mechanisms are activated swiftly in immune cells which trigger antibacterial immune reactions within minutes. These immune reactions are decisively dependent on the posttranslational modification of host cell proteins. This includes the ubiquitination of host cell proteins by either the accumulation of ubiquitin molecules on the protein or the cleavage of ubiquitin molecules. In both acute and chronic infections, the ubiquitination status of immunologically important signaling molecules in infected cells and leukocytes is of fundamental importance for the course of infection. For this reason, numerous bacteria have developed mechanisms to manipulate the ubiquitination of host proteins. A therapeutic manipulation of the ubiquitination processes potentially offers new treatment options of infectious diseases beyond antibiotics.

The immune system has to defend itself against pathogens. The photo shows an electron micrograph of the bacterium Acinetobacter baumannii. Source: Gudrun Holland; colouring: Michael Laue/RKI

What are the project goals?

A prerequisite for the development of novel therapeutics influencing the ubiquitination status of host signaling molecules is a profound understanding of the immunological function of ubiquitin attaching and cleaving proteases in bacterial infections. A combined effort on experimental and clinical studies will allow the identification of particularly important ubiquitin regulating host cell proteins. These studies will also provide the basis for the targeted development of therapeutics strengthening the antibacterial immune response by ubiquitin modifications.

How do we get there?

In order to evaluate the potential of ubiquitin modulating substances as antiinfectives, we will continue our work on the functional significance and individual domains of deubiquitinating enzymes (DUBs). We have already performed corresponding investigations on the DUBs TNFAIP3, CYLD and OTUB1 and we identified specific domains of these DUBs, which mediate the successful control of bacterial infections (Just et al., 2016; Wex et al., 2016; Wang et al., 2013; Wang et al., 2019; Nishanth et al., 2013). To further study structure/function relation of DUBs, we currently generate new innovative mouse models. In these experiments, we will use established experimental infection models such as listeriosis and additional new models of Staphylococcus aureus-infected implants. Additionally, we will extend these studies to ubiquitin-conjugating enzymes such as the E3-ligase SOCS2. In parallel, we will characterize the expression profile of the 100 known DUBs in samples of human implant-associated infections (cooperation with Prof. Stiesch) and in patients with cholangitis (PD Dr. Heidrich). On the basis of these data, we will develop DUB inhibitors directed against the identified immunologically important domains of DUBs and evaluate these inhibitors in the aforementioned model infections.

Electron microscope image of Listeria monocytogenes. Scale = 1 µm © Petra Kaiser/RKI


Project title: Structural and functional analysis of deubiquitinating enzymes as regulators and therapeutic targets in bacterial infections

Prof. Dr. Dirk Schlüter

Projekt: B12

Project B12 Publications

Publications of the Year 2023

OTUB1 inhibits breast cancer by non-canonically stabilizing CCN6. Zhao Y, Ruan J, Li Z, Su X, Chen K, Lin Y, Cai Y, Wang P, Liu B, Schlüter D, Liang G, Wang X. Clin Transl Med. 2023 Aug;13(8):e1385.

Publications of the Year 2022

Ovarian tumor domain proteases in pathogen infection. Schlüter D, Schulze-Niemand E, Stein M, Naumann M.  Trends Microbiol. 2022 Jan;30(1):22-33.

Deubiquitinating enzymes (DUBs): decipher underlying basis of neurodegenerative diseases. Liu B, Ruan J, Chen M, Li Z, Manjengwa G, Schlüter D, Song W, Wang X.  Mol Psychiatry. 2022 Jan;27(1):259-268.

Publications of the Year 2021

Deubiquitinating enzymes (DUBs): decipher underlying basis of neurodegenerative diseases. Liu B, Ruan J, Chen M, Li Z, Manjengwa G, Schlüter D, Song W, Wang X. Mol Psychiatry. 2021 Jul 20. doi: 10.1038/s41380-021-01233-8. Online ahead of print. PMID: 34285347 Review.

Ovarian tumor domain proteases in pathogen infection. Review. Trends in Microbiology. Dirk Schlüter, EricSchulze-Niemand, Matthias Stein, Michael Naumann, online 17 May 2021

OTUB1 prevents lethal hepatocyte necroptosis through stabilization of c-IAP1 during murine liver inflammation. Koschel J, Nishanth G, Just S, Harit K, Kröger A, Deckert M, Naumann M, Schlüter D. Cell Death Differ. 2021 Mar 12. doi: 10.1038/s41418-021-00752-9. Online ahead of print. PMID: 33712742

Publications of the Year 2020

Deubiquitinating enzymes (DUBs): DoUBle-edged swords in CNS autoimmunity. J Neuroinflammation. Ruan J, Schlüter D, Wang X. 2020 Apr 6;17(1):102. doi: 10.1186/s12974-020-01783-8. PMID: 32248814; PMCID: PMC7132956.

The deubiquitinase OTUB1 augments NF-κB-dependent immune responses in dendritic cells in infection and inflammation by stabilizing UBC13. Mulas F, Wang X, Song S, Nishanth G, Yi W, Brunn A, Larsen PK, Isermann B, Kalinke U, Barragan A, Naumann M, Deckert M, Schlüter D. . Cell Mol Immunol. 2020 Feb 5. doi: 10.1038/s41423-020-0362-6. Epub ahead of print. PMID: 32024978.

Publications of the Year 2019

The deubiquitinase OTUB1 inhibits central nervous system autoimmunity by preventing IFN-γ-induced hyperactivation of astrocytes through stabilization of SOCS1 X. Wang, F. Mulas, W Yi, A. Brunn, G. Nishanth, S. Just, A. Waisman, W. Brück, M. Deckert, D. Schlüter (2019) . EMBO J e100947. DOI: 10.15252/embj.2018100947.

Diversity of Bacteria Exhibiting Bile Acid-inducible 7alpha-dehydroxylation Genes in the Human Gut. Vital M, Rud T, Rath S, Pieper DH, Schlüter D. Comput Struct Biotechnol J 2019;17:1016-1019

Publications of the Project B12